GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0125s0041 Kalax.0125s0041	scaffold_125	352646	354775	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0125s0041.1 Kalax.0125s0041.1 PAC:32593338	High	No	902		Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -28.137 AMFE: -0.671 GC content %: 41.907
Klaxiflora_Kalax.0125s0041.2 Kalax.0125s0041.2 PAC:32593339	High	No	894		Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -27.673 AMFE: -0.660 GC content %: 41.946

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).