GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0131s0034 Kalax.0131s0034	scaffold_131	264607	266441	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0131s0034.1 Kalax.0131s0034.1 PAC:32573511	High	No	1214		Get ORF Coding potential... Type: noncoding Potential: -0.539 Folding energies... MFEI: -27.694 AMFE: -0.639 GC content %: 43.328
Klaxiflora_Kalax.0131s0034.2 Kalax.0131s0034.2 PAC:32573512	High	No	966		Get ORF Coding potential... Type: noncoding Potential: -0.485 Folding energies... MFEI: -28.416 AMFE: -0.625 GC content %: 45.445

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).