GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0131s0075 Kalax.0131s0075	scaffold_131	619090	621310	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0131s0075.1 Kalax.0131s0075.1 PAC:32573483	High	No	1592		Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -26.237 AMFE: -0.709 GC content %: 36.997
Klaxiflora_Kalax.0131s0075.2 Kalax.0131s0075.2 PAC:32573484	High	No	697		Get ORF Coding potential... Type: noncoding Potential: -0.594 Folding energies... MFEI: -29.943 AMFE: -0.658 GC content %: 45.481

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).