Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Klaxiflora_Kalax.0133s0010 Kalax.0133s0010 |
scaffold_133 | 112646 | 114234 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Klaxiflora_Kalax.0133s0010.1 Kalax.0133s0010.1 PAC:32551928 |
Low | No | 891 | Get ORF Coding potential... Type: noncoding Potential: -0.366 Folding energies... MFEI: -23.569 AMFE: -0.612 GC content %: 38.496 | |
Klaxiflora_Kalax.0133s0010.2 Kalax.0133s0010.2 PAC:32551929 |
Low | No | 796 | Get ORF Coding potential... Type: noncoding Potential: -0.405 Folding energies... MFEI: -22.701 AMFE: -0.596 GC content %: 38.065 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Klaxiflora_Kalax.0133s0010.1 | SwissProt | 2015-06-01 | A8IAP8 | 8.0e-11 |
Klaxiflora_Kalax.0133s0010.2 | SwissProt | 2015-06-01 | A7IPQ4 | 4.0e-11 |