Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Klaxiflora_Kalax.0141s0080 Kalax.0141s0080 |
scaffold_141 | 624441 | 628550 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Klaxiflora_Kalax.0141s0080.2 Kalax.0141s0080.2 PAC:32569958 |
Low | No | 776 | Get ORF Coding potential... Type: noncoding Potential: -0.628 Folding energies... MFEI: -30.116 AMFE: -0.599 GC content %: 50.258 | |
Klaxiflora_Kalax.0141s0080.4 Kalax.0141s0080.4 PAC:32569955 |
Low | No | 990 | Get ORF Coding potential... Type: noncoding Potential: -0.612 Folding energies... MFEI: -29.848 AMFE: -0.651 GC content %: 45.859 | |
Klaxiflora_Kalax.0141s0080.5 Kalax.0141s0080.5 PAC:32569956 |
Low | No | 966 | Get ORF Coding potential... Type: noncoding Potential: -0.688 Folding energies... MFEI: -29.669 AMFE: -0.629 GC content %: 47.205 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Klaxiflora_Kalax.0141s0080.4 | SwissProt | 2015-06-01 | P27684 | 2.0e-4 |
Klaxiflora_Kalax.0141s0080.5 | SwissProt | 2015-06-01 | P27684 | 2.0e-4 |
Klaxiflora_Kalax.0141s0080.2 | SwissProt | 2015-06-01 | P27684 | 1.0e-4 |