GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0149s0011 Kalax.0149s0011	scaffold_149	91088	93996	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0149s0011.1 Kalax.0149s0011.1 PAC:32587538	High	No	2524		Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -27.682 AMFE: -0.664 GC content %: 41.719
Klaxiflora_Kalax.0149s0011.2 Kalax.0149s0011.2 PAC:32587539	High	No	2425		Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -28.078 AMFE: -0.671 GC content %: 41.814
Klaxiflora_Kalax.0149s0011.3 Kalax.0149s0011.3 PAC:32587540	High	No	1888		Get ORF Coding potential... Type: noncoding Potential: -1.222 Folding energies... MFEI: -28.919 AMFE: -0.667 GC content %: 43.326

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).