GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0157s0039 Kalax.0157s0039	scaffold_157	443783	445320	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0157s0039.1 Kalax.0157s0039.1 PAC:32548348	High	No	320		Get ORF Coding potential... Type: noncoding Potential: -0.909 Folding energies... MFEI: -18.312 AMFE: -0.425 GC content %: 43.125
Klaxiflora_Kalax.0157s0039.2 Kalax.0157s0039.2 PAC:32548349	High	No	498		Get ORF Coding potential... Type: noncoding Potential: -0.928 Folding energies... MFEI: -17.631 AMFE: -0.441 GC content %: 39.960
Klaxiflora_Kalax.0157s0039.3 Kalax.0157s0039.3 PAC:32548350	High	No	560		Get ORF Coding potential... Type: noncoding Potential: -0.951 Folding energies... MFEI: -18.536 AMFE: -0.476 GC content %: 38.929

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).