Gene
Klaxiflora Kalax.0250s0042
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Klaxiflora_Kalax.0250s0042 Kalax.0250s0042 |
scaffold_250 | 387622 | 389450 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Klaxiflora_Kalax.0250s0042.1 Kalax.0250s0042.1 PAC:32579740 |
High | No | 1187 | Get ORF Coding potential... Type: noncoding Potential: -1.284 Folding energies... MFEI: -30.994 AMFE: -0.730 GC content %: 42.460 | |
| Klaxiflora_Kalax.0250s0042.2 Kalax.0250s0042.2 PAC:32579745 |
High | No | 1172 | Get ORF Coding potential... Type: noncoding Potential: -1.148 Folding energies... MFEI: -30.922 AMFE: -0.731 GC content %: 42.321 | |
| Klaxiflora_Kalax.0250s0042.3 Kalax.0250s0042.3 PAC:32579744 |
High | No | 697 | Get ORF Coding potential... Type: noncoding Potential: -1.210 Folding energies... MFEI: -31.004 AMFE: -0.693 GC content %: 44.763 | |
| Klaxiflora_Kalax.0250s0042.4 Kalax.0250s0042.4 PAC:32579741 |
High | No | 646 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -29.567 AMFE: -0.677 GC content %: 43.653 | |
| Klaxiflora_Kalax.0250s0042.5 Kalax.0250s0042.5 PAC:32579742 |
High | No | 663 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -30.241 AMFE: -0.675 GC content %: 44.796 | |
| Klaxiflora_Kalax.0250s0042.6 Kalax.0250s0042.6 PAC:32579743 |
High | No | 648 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -29.506 AMFE: -0.662 GC content %: 44.599 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
