GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0363s0011 Kalax.0363s0011	scaffold_363	159604	161416	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0363s0011.1 Kalax.0363s0011.1 PAC:32574022	High	No	611		Get ORF Coding potential... Type: noncoding Potential: -0.639 Folding energies... MFEI: -25.941 AMFE: -0.578 GC content %: 44.845
Klaxiflora_Kalax.0363s0011.2 Kalax.0363s0011.2 PAC:32574023	High	No	815		Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -24.896 AMFE: -0.613 GC content %: 40.613

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).