GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0382s0025 Kalax.0382s0025	scaffold_382	226279	228182	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0382s0025.1 Kalax.0382s0025.1 PAC:32540948	High	No	1674		Get ORF Coding potential... Type: noncoding Potential: -1.138 Folding energies... MFEI: -26.906 AMFE: -0.736 GC content %: 36.559
Klaxiflora_Kalax.0382s0025.2 Kalax.0382s0025.2 PAC:32540949	High	No	882		Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -25.000 AMFE: -0.596 GC content %: 41.950
Klaxiflora_Kalax.0382s0025.3 Kalax.0382s0025.3 PAC:32540950	High	No	831		Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -25.150 AMFE: -0.597 GC content %: 42.118

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).