Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Klaxiflora_Kalax.0424s0008 Kalax.0424s0008 |
scaffold_424 | 122455 | 128510 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Klaxiflora_Kalax.0424s0008.1 Kalax.0424s0008.1 PAC:32544517 |
Low | No | 1640 | Get ORF Coding potential... Type: noncoding Potential: -0.392 Folding energies... MFEI: -27.104 AMFE: -0.652 GC content %: 41.585 | |
Klaxiflora_Kalax.0424s0008.2 Kalax.0424s0008.2 PAC:32544518 |
Low | No | 1594 | Get ORF Coding potential... Type: noncoding Potential: -0.387 Folding energies... MFEI: -26.556 AMFE: -0.656 GC content %: 40.464 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Klaxiflora_Kalax.0424s0008.2 | SwissProt | 2015-06-01 | Q54TE3 | 4.0e-8 |
Klaxiflora_Kalax.0424s0008.1 | SwissProt | 2015-06-01 | Q54TE3 | 4.0e-8 |