Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Klaxiflora_Kalax.0492s0021 Kalax.0492s0021 |
scaffold_492 | 103698 | 107302 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Klaxiflora_Kalax.0492s0021.1 Kalax.0492s0021.1 PAC:32535274 |
Low | No | 1451 | Get ORF Coding potential... Type: noncoding Potential: -0.666 Folding energies... MFEI: -28.822 AMFE: -0.665 GC content %: 43.349 | |
Klaxiflora_Kalax.0492s0021.2 Kalax.0492s0021.2 PAC:32535275 |
Low | No | 1053 | Get ORF Coding potential... Type: noncoding Potential: -0.634 Folding energies... MFEI: -28.746 AMFE: -0.648 GC content %: 44.349 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Klaxiflora_Kalax.0492s0021.1 | SwissProt | 2015-06-01 | Q14657 | 8.0e-5 |
Klaxiflora_Kalax.0492s0021.2 | SwissProt | 2015-06-01 | Q14657 | 5.0e-5 |