Gene
Klaxiflora Kalax.0744s0002
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Klaxiflora_Kalax.0744s0002 Kalax.0744s0002 |
scaffold_744 | 33357 | 37337 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Klaxiflora_Kalax.0744s0002.1 Kalax.0744s0002.1 PAC:32559172 |
High | No | 3138 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -27.186 AMFE: -0.767 GC content %: 35.437 | |
| Klaxiflora_Kalax.0744s0002.2 Kalax.0744s0002.2 PAC:32559174 |
High | No | 2738 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -27.071 AMFE: -0.778 GC content %: 34.806 | |
| Klaxiflora_Kalax.0744s0002.3 Kalax.0744s0002.3 PAC:32559175 |
High | No | 2821 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -27.203 AMFE: -0.775 GC content %: 35.094 | |
| Klaxiflora_Kalax.0744s0002.4 Kalax.0744s0002.4 PAC:32559173 |
High | No | 3114 | Get ORF Coding potential... Type: noncoding Potential: -1.042 Folding energies... MFEI: -27.177 AMFE: -0.767 GC content %: 35.453 | |
| Klaxiflora_Kalax.0744s0002.5 Kalax.0744s0002.5 PAC:32559176 |
High | No | 2852 | Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -27.111 AMFE: -0.770 GC content %: 35.203 | |
| Klaxiflora_Kalax.0744s0002.6 Kalax.0744s0002.6 PAC:32559177 |
High | No | 2857 | Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -27.105 AMFE: -0.770 GC content %: 35.212 | |
| Klaxiflora_Kalax.0744s0002.7 Kalax.0744s0002.7 PAC:32559178 |
High | No | 2797 | Get ORF Coding potential... Type: noncoding Potential: -1.036 Folding energies... MFEI: -27.193 AMFE: -0.775 GC content %: 35.109 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
