GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0756s0015 Kalax.0756s0015	scaffold_756	99036	101413	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0756s0015.1 Kalax.0756s0015.1 PAC:32596788	High	No	1160		Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -27.414 AMFE: -0.613 GC content %: 44.741
Klaxiflora_Kalax.0756s0015.2 Kalax.0756s0015.2 PAC:32596789	High	No	617		Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -25.786 AMFE: -0.517 GC content %: 49.919

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).