GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0757s0007 Kalax.0757s0007	scaffold_757	50981	53880	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0757s0007.2 Kalax.0757s0007.2 PAC:32564978	High	No	1095		Get ORF Coding potential... Type: noncoding Potential: -0.790 Folding energies... MFEI: -29.708 AMFE: -0.665 GC content %: 44.658
Klaxiflora_Kalax.0757s0007.3 Kalax.0757s0007.3 PAC:32564976	High	No	1095		Get ORF Coding potential... Type: noncoding Potential: -0.664 Folding energies... MFEI: -29.671 AMFE: -0.666 GC content %: 44.566
Klaxiflora_Kalax.0757s0007.4 Kalax.0757s0007.4 PAC:32564977	High	No	1129		Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -29.415 AMFE: -0.664 GC content %: 44.287
Klaxiflora_Kalax.0757s0007.5 Kalax.0757s0007.5 PAC:32564979	High	No	1128		Get ORF Coding potential... Type: noncoding Potential: -0.955 Folding energies... MFEI: -29.415 AMFE: -0.664 GC content %: 44.326

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).