GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0767s0011 Kalax.0767s0011	scaffold_767	48417	50477	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0767s0011.1 Kalax.0767s0011.1 PAC:32545910	High	No	908		Get ORF Coding potential... Type: noncoding Potential: -0.885 Folding energies... MFEI: -25.507 AMFE: -0.616 GC content %: 41.410
Klaxiflora_Kalax.0767s0011.2 Kalax.0767s0011.2 PAC:32545911	High	No	700		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -26.271 AMFE: -0.611 GC content %: 43.000

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).