GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.0810s0020 Kalax.0810s0020	scaffold_810	100388	102789	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.0810s0020.1 Kalax.0810s0020.1 PAC:32580806	High	No	1599		Get ORF Coding potential... Type: noncoding Potential: -1.113 Folding energies... MFEI: -27.036 AMFE: -0.650 GC content %: 41.588
Klaxiflora_Kalax.0810s0020.2 Kalax.0810s0020.2 PAC:32580807	High	No	1460		Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -27.521 AMFE: -0.657 GC content %: 41.918

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).