Gene
Klaxiflora Kalax.0837s0021
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Klaxiflora_Kalax.0837s0021 Kalax.0837s0021 |
scaffold_837 | 123273 | 127658 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Klaxiflora_Kalax.0837s0021.1 Kalax.0837s0021.1 PAC:32572019 |
Low | No | 1109 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -27.421 AMFE: -0.661 GC content %: 41.479 | |
| Klaxiflora_Kalax.0837s0021.2 Kalax.0837s0021.2 PAC:32572023 |
Low | No | 475 | Get ORF Coding potential... Type: noncoding Potential: -0.093 Folding energies... MFEI: -24.463 AMFE: -0.551 GC content %: 44.421 | |
| Klaxiflora_Kalax.0837s0021.3 Kalax.0837s0021.3 PAC:32572020 |
Low | No | 537 | Get ORF Coding potential... Type: noncoding Potential: -0.134 Folding energies... MFEI: -26.015 AMFE: -0.592 GC content %: 43.948 | |
| Klaxiflora_Kalax.0837s0021.4 Kalax.0837s0021.4 PAC:32572025 |
Low | No | 1082 | Get ORF Coding potential... Type: noncoding Potential: -1.012 Folding energies... MFEI: -26.830 AMFE: -0.652 GC content %: 41.128 | |
| Klaxiflora_Kalax.0837s0021.5 Kalax.0837s0021.5 PAC:32572024 |
Low | No | 1072 | Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -26.567 AMFE: -0.647 GC content %: 41.045 | |
| Klaxiflora_Kalax.0837s0021.6 Kalax.0837s0021.6 PAC:32572022 |
Low | No | 1106 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -27.604 AMFE: -0.665 GC content %: 41.501 | |
| Klaxiflora_Kalax.0837s0021.7 Kalax.0837s0021.7 PAC:32572021 |
Low | No | 685 | Get ORF Coding potential... Type: noncoding Potential: -0.904 Folding energies... MFEI: -26.321 AMFE: -0.646 GC content %: 40.730 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Klaxiflora_Kalax.0837s0021.4 | SwissProt | 2015-06-01 | Q6DJI4 | 4.0e-9 |
| Klaxiflora_Kalax.0837s0021.5 | SwissProt | 2015-06-01 | Q6DJI4 | 5.0e-9 |
| Klaxiflora_Kalax.0837s0021.6 | SwissProt | 2015-06-01 | Q6DJI4 | 5.0e-9 |
| Klaxiflora_Kalax.0837s0021.1 | SwissProt | 2015-06-01 | Q6DJI4 | 5.0e-9 |
| Klaxiflora_Kalax.0837s0021.7 | SwissProt | 2015-06-01 | Q6DJI4 | 9.0e-10 |
| Klaxiflora_Kalax.0837s0021.2 | SwissProt | 2015-06-01 | Q6DJI4 | 5.0e-10 |
| Klaxiflora_Kalax.0837s0021.3 | SwissProt | 2015-06-01 | Q6DJI4 | 5.0e-10 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
