GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.1373s0006 Kalax.1373s0006	scaffold_1373	39504	41290	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.1373s0006.1 Kalax.1373s0006.1 PAC:32595000	High	No	1215		Get ORF Coding potential... Type: noncoding Potential: -0.242 Folding energies... MFEI: -25.778 AMFE: -0.602 GC content %: 42.798
Klaxiflora_Kalax.1373s0006.2 Kalax.1373s0006.2 PAC:32595001	High	No	811		Get ORF Coding potential... Type: noncoding Potential: -0.303 Folding energies... MFEI: -26.967 AMFE: -0.611 GC content %: 44.143

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).