GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.1555s0003 Kalax.1555s0003	scaffold_1555	13053	17011	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.1555s0003.1 Kalax.1555s0003.1 PAC:32564432	High	No	1437		Get ORF Coding potential... Type: noncoding Potential: -1.181 Folding energies... MFEI: -23.869 AMFE: -0.564 GC content %: 42.310
Klaxiflora_Kalax.1555s0003.2 Kalax.1555s0003.2 PAC:32564433	High	No	1341		Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -24.631 AMFE: -0.575 GC content %: 42.804

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).