Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Klaxiflora_Kalax.2543s0001 Kalax.2543s0001 |
scaffold_2543 | 104 | 1608 | Phytozome | [[Species:|]]"Species:" cannot be used as a page name in this wiki. | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Klaxiflora_Kalax.2543s0001.1 Kalax.2543s0001.1 PAC:32585570 |
Low | No | 511 | Get ORF Coding potential... Type: noncoding Potential: -0.618 Folding energies... MFEI: -22.857 AMFE: -0.543 GC content %: 42.074 | |
Klaxiflora_Kalax.2543s0001.2 Kalax.2543s0001.2 PAC:32585571 |
Low | No | 705 | Get ORF Coding potential... Type: noncoding Potential: -0.644 Folding energies... MFEI: -24.099 AMFE: -0.611 GC content %: 39.433 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Klaxiflora_Kalax.2543s0001.1 | SwissProt | 2015-06-01 | Q0WQQ1 | 2.0e-11 |
Klaxiflora_Kalax.2543s0001.2 | SwissProt | 2015-06-01 | Q0WQQ1 | 4.0e-11 |