GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Klaxiflora_Kalax.3067s0001 Kalax.3067s0001	scaffold_3067	12	1068	Phytozome		[[Species:|]]"Species:" cannot be used as a page name in this wiki.	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Klaxiflora_Kalax.3067s0001.1 Kalax.3067s0001.1 PAC:32555937	High	No	750		Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -25.533 AMFE: -0.572 GC content %: 44.667
Klaxiflora_Kalax.3067s0001.2 Kalax.3067s0001.2 PAC:32555938	High	No	638		Get ORF Coding potential... Type: noncoding Potential: -0.789 Folding energies... MFEI: -26.536 AMFE: -0.590 GC content %: 44.984
Klaxiflora_Kalax.3067s0001.3 Kalax.3067s0001.3 PAC:32555939	High	No	632		Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -26.487 AMFE: -0.592 GC content %: 44.778

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).