GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Lusitatissimum_Lus10001112.g Lus10001112.g	scaffold252	47459	47722	Phytozome	v1.0	Linum_usitatissimum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Lusitatissimum_Lus10001112 Lus10001112 PAC:23148492	High	No	264		Get ORF Coding potential... Type: noncoding Potential: -0.396 Folding energies... MFEI: -27.955 AMFE: -0.543 GC content %: 51.515

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).