GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Lusitatissimum_Lus10006404.g Lus10006404.g	scaffold1603	241003	241332	Phytozome	v1.0	Linum_usitatissimum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Lusitatissimum_Lus10006404 Lus10006404 PAC:23162666	High	No	330		Get ORF Coding potential... Type: noncoding Potential: -1.229 Folding energies... MFEI: -31.333 AMFE: -0.615 GC content %: 50.909

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).