GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Lusitatissimum_Lus10011908.g Lus10011908.g	scaffold754	370777	371102	Phytozome	v1.0	Linum_usitatissimum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Lusitatissimum_Lus10011908 Lus10011908 PAC:23169269	High	No	231		Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -24.935 AMFE: -0.565 GC content %: 44.156

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).