GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Macuminata_GSMUA_Achr1G05600_001 GSMUA_Achr1G05600_001	chr1	4635132	4635581	Phytozome	v1	Musa_acuminata	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Macuminata_GSMUA_Achr1T05600_001 GSMUA_Achr1T05600_001 PAC:32314057	High	No	354		Get ORF Coding potential... Type: noncoding Potential: -1.591 Folding energies... MFEI: -23.842 AMFE: -0.422 GC content %: 56.497

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).