Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Macuminata_GSMUA_Achr3G16220_001 GSMUA_Achr3G16220_001 |
chr3 | 17442607 | 17445818 | Phytozome | v1 | Musa_acuminata | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Macuminata_GSMUA_Achr3T16220_001 GSMUA_Achr3T16220_001 PAC:32291184 |
Low | No | 1353 | Get ORF Coding potential... Type: noncoding Potential: -0.836 Folding energies... MFEI: -25.514 AMFE: -0.639 GC content %: 39.911 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Macuminata_GSMUA_Achr3T16220_001 | SwissProt | 2015-06-01 | Q9M0Y8 | 2.0e-15 |