GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Macuminata_GSMUA_Achr3G30820_001 GSMUA_Achr3G30820_001	chr3	29418383	29419455	Phytozome	v1	Musa_acuminata	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Macuminata_GSMUA_Achr3T30820_001 GSMUA_Achr3T30820_001 PAC:32291894	High	No	243		Get ORF Coding potential... Type: noncoding Potential: -1.591 Folding energies... MFEI: -25.844 AMFE: -0.458 GC content %: 56.379

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).