GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Macuminata_GSMUA_Achr5G14870_001 GSMUA_Achr5G14870_001	chr5	10779938	10780243	Phytozome	v1	Musa_acuminata	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Macuminata_GSMUA_Achr5T14870_001 GSMUA_Achr5T14870_001 PAC:32325695	High	No	306		Get ORF Coding potential... Type: noncoding Potential: -1.591 Folding energies... MFEI: -26.144 AMFE: -0.580 GC content %: 45.098

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).