Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Macuminata_GSMUA_Achr7G14120_001 GSMUA_Achr7G14120_001 |
chr7 | 11291585 | 11292111 | Phytozome | v1 | Musa_acuminata | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Macuminata_GSMUA_Achr7T14120_001 GSMUA_Achr7T14120_001 PAC:32301075 |
Low | No | 351 | Get ORF Coding potential... Type: noncoding Potential: -1.591 Folding energies... MFEI: -27.892 AMFE: -0.576 GC content %: 48.433 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Macuminata_GSMUA_Achr7T14120_001 | SwissProt | 2015-06-01 | O64481 | 2.0e-7 |
Macuminata_GSMUA_Achr7T14120_001 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-13_ZM |