Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Mdomestica_MDP0000122176 MDP0000122176 |
MDC005446.325 | 7682 | 8602 | Phytozome | v1.0 | Malus_domestica | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Mdomestica_MDP0000122176 MDP0000122176 PAC:22629534 |
Low | No | 333 | Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -25.796 AMFE: -0.514 GC content %: 50.150 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Mdomestica_MDP0000122176 | RepBase (RepeatMasker) | 2014-01-31 | Copia-40_Mad-I |