Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Mdomestica_MDP0000122862 MDP0000122862 |
MDC006500.542 | 282 | 1673 | Phytozome | v1.0 | Malus_domestica | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Mdomestica_MDP0000122862 MDP0000122862 PAC:22677458 |
Low | No | 354 | Get ORF Coding potential... Type: noncoding Potential: -0.316 Folding energies... MFEI: -21.723 AMFE: -0.545 GC content %: 39.831 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Mdomestica_MDP0000122862 | RepBase (RepeatMasker) | 2014-01-31 | Caulimovirus-1_PD |