Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Mdomestica_MDP0000129587 MDP0000129587 |
MDC017035.444 | 3915 | 4689 | Phytozome | v1.0 | Malus_domestica | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Mdomestica_MDP0000129587 MDP0000129587 PAC:22622450 |
Low | No | 294 | Get ORF Coding potential... Type: noncoding Potential: -0.126 Folding energies... MFEI: -27.687 AMFE: -0.561 GC content %: 49.320 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Mdomestica_MDP0000129587 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-1_Mad-I |