GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mdomestica_MDP0000131883 MDP0000131883	MDC020790.112	4167	4448	Phytozome	v1.0	Malus_domestica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mdomestica_MDP0000131883 MDP0000131883 PAC:22664856	High	No	282		Get ORF Coding potential... Type: noncoding Potential: -0.704 Folding energies... MFEI: -27.163 AMFE: -0.443 GC content %: 61.348

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).