GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.01G081200 Manes.01G081200	Chromosome01	20680371	20683180	Phytozome	v6.1	Manihot_esculenta	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.01G081200.1 Manes.01G081200.1 PAC:32357387	High	No	1295		Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -23.745 AMFE: -0.597 GC content %: 39.768
Mesculenta_Manes.01G081200.2 Manes.01G081200.2 PAC:32357389	High	No	1236		Get ORF Coding potential... Type: noncoding Potential: -1.209 Folding energies... MFEI: -23.883 AMFE: -0.602 GC content %: 39.644
Mesculenta_Manes.01G081200.3 Manes.01G081200.3 PAC:32357390	High	No	842		Get ORF Coding potential... Type: noncoding Potential: -0.941 Folding energies... MFEI: -22.743 AMFE: -0.536 GC content %: 42.399
Mesculenta_Manes.01G081200.4 Manes.01G081200.4 PAC:32357388	High	No	901		Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -22.619 AMFE: -0.534 GC content %: 42.397

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).