GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.01G094000 Manes.01G094000	Chromosome01	21862517	21863320	Phytozome	v6.1	Manihot_esculenta	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.01G094000.1 Manes.01G094000.1 PAC:32358749	High	No	519		Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -27.380 AMFE: -0.602 GC content %: 45.472
Mesculenta_Manes.01G094000.2 Manes.01G094000.2 PAC:32358750	High	No	640		Get ORF Coding potential... Type: noncoding Potential: -0.963 Folding energies... MFEI: -28.812 AMFE: -0.636 GC content %: 45.312

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).