GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.03G065800 Manes.03G065800	Chromosome03	7307191	7311304	Phytozome	v6.1	Manihot_esculenta	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.03G065800.1 Manes.03G065800.1 PAC:32365138	High	No	604		Get ORF Coding potential... Type: noncoding Potential: -0.651 Folding energies... MFEI: -23.394 AMFE: -0.604 GC content %: 38.742

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).