GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.03G119900 Manes.03G119900	Chromosome03	21641136	21650979	Phytozome	v6.1	Manihot_esculenta	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.03G119900.2 Manes.03G119900.2 PAC:32363410	High	No	697		Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -27.374 AMFE: -0.669 GC content %: 40.890
Mesculenta_Manes.03G119900.4 Manes.03G119900.4 PAC:32363411	High	No	675		Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -28.222 AMFE: -0.683 GC content %: 41.333

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).