GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.04G000500 Manes.04G000500	Chromosome04	167155	169519	Phytozome	v6.1	Manihot_esculenta	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.04G000500.1 Manes.04G000500.1 PAC:32329257	High	No	738		Get ORF Coding potential... Type: noncoding Potential: -0.604 Folding energies... MFEI: -25.678 AMFE: -0.649 GC content %: 39.566
Mesculenta_Manes.04G000500.2 Manes.04G000500.2 PAC:32329258	High	No	705		Get ORF Coding potential... Type: noncoding Potential: -0.592 Folding energies... MFEI: -24.723 AMFE: -0.636 GC content %: 38.865

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).