GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.04G005100 Manes.04G005100	Chromosome04	550333	550644	Phytozome	v6.1	Manihot_esculenta	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.04G005100.1 Manes.04G005100.1 PAC:32328352	High	No	312		Get ORF Coding potential... Type: noncoding Potential: -0.543 Folding energies... MFEI: -21.282 AMFE: -0.540 GC content %: 39.423

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).