GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.06G067300 Manes.06G067300	Chromosome06	18125745	18129337	Phytozome	v6.1	Manihot_esculenta	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.06G067300.1 Manes.06G067300.1 PAC:32346095	High	No	864		Get ORF Coding potential... Type: noncoding Potential: -0.715 Folding energies... MFEI: -27.164 AMFE: -0.690 GC content %: 39.352
Mesculenta_Manes.06G067300.4 Manes.06G067300.4 PAC:32346098	High	No	965		Get ORF Coding potential... Type: noncoding Potential: -0.867 Folding energies... MFEI: -27.016 AMFE: -0.672 GC content %: 40.207

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).