GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.06G147500 Manes.06G147500	Chromosome06	25046541	25047581	Phytozome	v6.1	Manihot_esculenta	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.06G147500.1 Manes.06G147500.1 PAC:32347336	Low	No	727		Get ORF Coding potential... Type: coding Potential: 0.557 Folding energies... MFEI: -21.774 AMFE: -0.574 GC content %: 37.964
Mesculenta_Manes.06G147500.2 Manes.06G147500.2 PAC:32347337	Low	No	742		Get ORF Coding potential... Type: coding Potential: 0.508 Folding energies... MFEI: -21.779 AMFE: -0.573 GC content %: 38.005

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).