Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Mesculenta_Manes.07G054000 Manes.07G054000 |
Chromosome07 | 5644448 | 5646139 | Phytozome | v6.1 | Manihot_esculenta | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Mesculenta_Manes.07G054000.2 Manes.07G054000.2 PAC:32353599 |
Low | No | 374 | Get ORF Coding potential... Type: noncoding Potential: -0.242 Folding energies... MFEI: -20.695 AMFE: -0.549 GC content %: 37.701 | |
Mesculenta_Manes.07G054000.3 Manes.07G054000.3 PAC:32353600 |
Low | No | 584 | Get ORF Coding potential... Type: noncoding Potential: -0.440 Folding energies... MFEI: -20.103 AMFE: -0.596 GC content %: 33.733 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Mesculenta_Manes.07G054000.2 | RepBase (RepeatMasker) | 2014-01-31 | AT9MU1 | |
Mesculenta_Manes.07G054000.3 | RepBase (RepeatMasker) | 2014-01-31 | AT9MU1 |