Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Mesculenta_Manes.08G047600 Manes.08G047600 |
Chromosome08 | 4517821 | 4520573 | Phytozome | v6.1 | Manihot_esculenta | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Mesculenta_Manes.08G047600.1 Manes.08G047600.1 PAC:32331460 |
Low | No | 844 | Get ORF Coding potential... Type: noncoding Potential: -0.804 Folding energies... MFEI: -28.744 AMFE: -0.603 GC content %: 47.630 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Mesculenta_Manes.08G047600.1 | SwissProt | 2015-06-01 | P92519 | 6.0e-17 |
Mesculenta_Manes.08G047600.1 | RepBase (RepeatMasker) | 2014-01-31 | Copia-8_CP-I |