GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.10G081000 Manes.10G081000	Chromosome10	15641208	15647506	Phytozome	v6.1	Manihot_esculenta	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.10G081000.1 Manes.10G081000.1 PAC:32368800	High	No	533		Get ORF Coding potential... Type: noncoding Potential: -0.715 Folding energies... MFEI: -23.527 AMFE: -0.534 GC content %: 44.090
Mesculenta_Manes.10G081000.2 Manes.10G081000.2 PAC:32368801	High	No	468		Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -24.252 AMFE: -0.535 GC content %: 45.299
Mesculenta_Manes.10G081000.3 Manes.10G081000.3 PAC:32368802	High	No	452		Get ORF Coding potential... Type: noncoding Potential: -1.172 Folding energies... MFEI: -24.137 AMFE: -0.527 GC content %: 45.796

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).