GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.10G108400 Manes.10G108400	Chromosome10	21062239	21062935	Phytozome	v6.1	Manihot_esculenta	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.10G108400.1 Manes.10G108400.1 PAC:32367910	High	No	558		Get ORF Coding potential... Type: noncoding Potential: -0.698 Folding energies... MFEI: -20.932 AMFE: -0.599 GC content %: 34.946
Mesculenta_Manes.10G108400.2 Manes.10G108400.2 PAC:32367911	High	No	543		Get ORF Coding potential... Type: noncoding Potential: -0.690 Folding energies... MFEI: -20.994 AMFE: -0.603 GC content %: 34.807

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).