GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.12G132400 Manes.12G132400	Chromosome12	28731796	28736337	Phytozome	v6.1	Manihot_esculenta	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.12G132400.1 Manes.12G132400.1 PAC:32344650	High	No	404		Get ORF Coding potential... Type: noncoding Potential: -0.696 Folding energies... MFEI: -18.243 AMFE: -0.505 GC content %: 36.139
Mesculenta_Manes.12G132400.2 Manes.12G132400.2 PAC:32344652	High	No	643		Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -20.871 AMFE: -0.596 GC content %: 34.992
Mesculenta_Manes.12G132400.3 Manes.12G132400.3 PAC:32344651	High	No	1480		Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -24.507 AMFE: -0.637 GC content %: 38.446

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).