GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.13G012300 Manes.13G012300	Chromosome13	1182543	1184478	Phytozome	v6.1	Manihot_esculenta	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.13G012300.1 Manes.13G012300.1 PAC:32339532	High	No	788		Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -28.744 AMFE: -0.633 GC content %: 45.431
Mesculenta_Manes.13G012300.2 Manes.13G012300.2 PAC:32339533	High	No	747		Get ORF Coding potential... Type: noncoding Potential: -0.812 Folding energies... MFEI: -25.596 AMFE: -0.596 GC content %: 42.972

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).