GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.13G070300 Manes.13G070300	Chromosome13	8203685	8205237	Phytozome	v6.1	Manihot_esculenta	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.13G070300.1 Manes.13G070300.1 PAC:32337830	High	No	1315		Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -23.460 AMFE: -0.655 GC content %: 35.817
Mesculenta_Manes.13G070300.2 Manes.13G070300.2 PAC:32337831	High	No	1091		Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -23.089 AMFE: -0.639 GC content %: 36.114

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).