GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Mesculenta_Manes.13G075900 Manes.13G075900	Chromosome13	10136880	10137844	Phytozome	v6.1	Manihot_esculenta	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Mesculenta_Manes.13G075900.1 Manes.13G075900.1 PAC:32339375	High	No	623		Get ORF Coding potential... Type: noncoding Potential: -1.149 Folding energies... MFEI: -24.366 AMFE: -0.533 GC content %: 45.746
Mesculenta_Manes.13G075900.2 Manes.13G075900.2 PAC:32339376	High	No	602		Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -24.252 AMFE: -0.527 GC content %: 46.013

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).